PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0005s01200.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 226aa    MW: 24498.9 Da    PI: 9.7884
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0005s01200.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.59.8e-3242146196
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae+h         +   ++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++
  Vang0005s01200.4  42 FEKAVTPSDVGKLNRLVIPKQHAEKHfplhsangvSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHR 134
                       89****************************998886667799**************************************************8 PP

                       -SSSEE..EEEE CS
                B3  85 dgrsefelvvkv 96 
                       +   +++l++ +
  Vang0005s01200.4 135 STGPDKQLYIDW 146
                       766777777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-4037151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-3040145IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-2841135No hitNo description
PROSITE profilePS5086313.50742150IPR003340B3 DNA binding domain
SMARTSM010193.5E-2542150IPR003340B3 DNA binding domain
PfamPF023628.5E-2942147IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
LGTFNEEDEA ARAYDIAGGA AAAGNGNSIA GACFVKAREQ LFEKAVTPSD VGKLNRLVIP  60
KQHAEKHFPL HSANGVSATA AKGVLLNFED VAGKVWRFRY SYWNSSQSYV LTKGWSRFVK  120
EKNLKAGDTV CFHRSTGPDK QLYIDWKARN NNVNEVGLFG PVGPVVEPIQ MVRLFGVNIL  180
KLPGSEPNGN NNASGTIPGF CNGKRREMEL FSLECSKKPK IIGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-603915011118DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521390.11e-145PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9C6M54e-75RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A0S3T2B31e-144A0A0S3T2B3_PHAAN; Uncharacterized protein
TrEMBLA0A0L9UT171e-144A0A0L9UT17_PHAAN; Uncharacterized protein
STRINGGLYMA02G11060.11e-122(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.14e-74RAV family protein